Basic Information
Locus ID:
gene-LOC132605852
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 7650845 | 7656992 | + | gene-LOC132605852 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 15,353.86 Da | 72.63 | 89.32 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019233208.1 | PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Nicotiana attenuata] | 0 |
| TrEMBL | A0A1J6J1Y7 | E3 ubiquitin-protein ligase sdir1 OS=Nicotiana attenuata OX=49451 GN=SDIR1_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9948 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23778, gene_6978 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035143 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g025160, BVRB_7g173500 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg1712, Sbi_jg1715, Sbi_jg21275, Sbi_jg22584 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16467, Seu_jg3032 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003233, GOSA_00016329 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl62559, Sgl67106, Sgl73066, Sgl76452 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005036, gene:ENSEOMG00000019630 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0018590, CQ.Regalona.r1.2AG0020360 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30063020, pistato.v30175730 |
| Apiaceae | Apium graveolens | 1 | Ag2G00857 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G015730 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103715660, gene-LOC103716742, gene-LOC120110138 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2336.V1.1, AsparagusV1_05.318.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G08887 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G55530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010626m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g06950.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g070090.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G1137, Ceq08G2110, Ceq08G2114 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2212 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g00830 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0652s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g00190 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1755, evm.TU.LG09.1236 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040050 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.4189, CH02.1543 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0242750, gene-QOZ80_3BG0285440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0388580.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069045 |
| Poaceae | Oryza coarctata | 2 | Oco05G009440, Oco06G009790 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g16570.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G402800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102280, Pt_Chr0102308, Pt_Chr0102310 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G030880, Chr12G008740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G366800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG013080, gene_TRIDC4BG037290 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G096000.1, TraesCS4B02G208600.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb012200_P001, Zm00001eb397760_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3762 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3933 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2063, evm.TU.LG23.299 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g01150 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.383, evm.TU.Scaffold_12_RagTag.227 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24576, nbisL1-mrna-25990 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14755, nbisL1-mrna-7062 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4546 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000005l.124, evm.TU.utg000008l.975 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000427, Maker00010192, Maker00017893 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2078, nbisL1-mrna-5555 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11735, nbisL1-mrna-9439 |
| Salicaceae | Populus euphratica | 2 | populus_peu20306, populus_peu35701 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605852, gene-LOC132640342 |
| Solanaceae | Solanum chilense | 2 | SOLCI002716500, SOLCI007047700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107018644, gene-LOC107021742 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13226_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0808 |
| Zosteraceae | Zostera marina | 1 | Zosma06g24990.v3.1 |