Basic Information
Locus ID:
gene-LOC132605851
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 7634126 | 7636038 | + | gene-LOC132605851 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 44,031.25 Da | 83.10 | 55.54 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 186 | 227 | 4.60594E-24 | - |
| Pfam | PF13639 | Ring finger domain | 185 | 227 | 3.7E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 3 | 32 | 1.6E-12 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 258 | 377 | 2.0E-39 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 232 | 9.06E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 233 | 2.7E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 186 | 226 | 1.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 186 | 227 | 12.031935 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 56 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46620.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_047270639.1 | E3 ubiquitin-protein ligase RDUF2 [Capsicum annuum] | 0 |
| Q9SNB6 | E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8GX66 | RING-type E3 ubiquitin transferase OS=Capsicum annuum OX=4072 GN=T459_16154 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology