Basic Information
Locus ID:
gene-LOC132605831
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 7107885 | 7112981 | + | gene-LOC132605831 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 28,032.90 Da | 62.41 | 69.65 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 123 | 188 | 1.79363E-12 | - |
| Pfam | PF12906 | RING-variant domain | 151 | 187 | 1.1E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 117 | 190 | 1.85E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 198 | 1.1E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 122 | 188 | 6.3E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 115 | 194 | 16.904299 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_016511852.1 | PREDICTED: uncharacterized protein LOC107828968 [Nicotiana tabacum] | 0 |
| TrEMBL | A0A1S4DEH6 | uncharacterized protein LOC107828968 OS=Nicotiana tabacum OX=4097 GN=LOC107828968 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology