Basic Information
Locus ID:
gene-LOC132605704
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 3261425 | 3266935 | - | gene-LOC132605704 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 47,266.67 Da | 51.12 | 90.74 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00888 | Cullin family | 13 | 402 | 5.0E-78 | IPR001373 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 8 | 374 | 6.28E-97 | IPR016159 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 265 | 382 | 4.7E-34 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 140 | 261 | 1.0E-38 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 5 | 139 | 1.0E-31 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04340 (Hedgehog signaling pathway)
map04340 (Hedgehog signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02570.1 | cullin 1. Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response. | 0 |
| RefSeq | XP_009624347.1 | cullin-1-like [Nicotiana tomentosiformis] | 0 |
| Q94AH6 | Cullin-1 OS=Arabidopsis thaliana OX=3702 GN=CUL1 PE=1 SV=1 | 0 | |
| TrEMBL | Q711G7 | Cullin 1B OS=Nicotiana tabacum OX=4097 GN=cul1B PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11992 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005783 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g081090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17091, Sbi_jg61634 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg356 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008391 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24492, Sgl29674 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008591, gene:ENSEOMG00000026987 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0006040, CQ.Regalona.r1.4AG0008480 ... |
| Apiaceae | Apium graveolens | 2 | Ag1G00511, Ag1G00512 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G009480 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716058 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G59790.1 |
| Brassicaceae | Brassica nigra | 2 | BniB08g045230.2N, BniB08g067860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1194 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1248 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026597 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4439, BH02.4478, CH02.4525 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1BG0065810, gene-QOZ80_1BG0095770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0314170.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057720 |
| Poaceae | Oryza coarctata | 1 | Oco02G030580 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g70920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G395800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403170 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G001580, Chr05G032890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G724200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG064620, gene_TRIDC3BG072950 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G457400.1, TraesCS3B02G497300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb142010_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28221 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11888 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.663, evm.TU.LG22.1261 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7521 |
| Salicaceae | Populus euphratica | 3 | populus_peu13388, populus_peu15721, populus_peu34273 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132605704, gene-LOC132605708, gene-LOC132644298 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI006323400, SOLCI006610600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107013940, gene-LOC107015883, gene-LOC107021954 |