Basic Information
Locus ID:
gene-LOC132605614
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
TIR1
Description:
Transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1043135 | 1047309 | + | gene-LOC132605614 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 67,633.08 Da | 47.24 | 97.03 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 73 | 119 | 1.9E-24 | IPR041101 |
| Pfam | PF18511 | F-box | 16 | 54 | 1.6E-15 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 490 | 509 | 0.87 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 91 | 528 | 2.62E-33 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 47 | 1.31E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 52 | 2.8E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 53 | 586 | 7.4E-177 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 190 | 216 | 330.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 490 | 514 | 22.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 136 | 161 | 160.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 16 | 57 | 0.0038 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 323 | 346 | 210.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 381 | 405 | 0.53 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_049410816.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Solanum stenotomum] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1U8GXZ7 | protein TRANSPORT INHIBITOR RESPONSE 1-like OS=Capsicum annuum OX=4072 GN=LOC107873700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology