Basic Information
Locus ID:
gene-LOC132605600
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 166429145 | 166435879 | - | gene-LOC132605600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 72,856.25 Da | 45.35 | 99.88 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 260 | 301 | 4.31333E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 465 | 503 | 3.5E-7 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 382 | 421 | 4.2E-11 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 547 | 586 | 2.6E-5 | IPR000225 |
| Pfam | PF04564 | U-box domain | 256 | 325 | 2.3E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 353 | 634 | 6.84E-54 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 331 | 7.51E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 333 | 4.8E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 530 | 647 | 2.0E-17 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 348 | 529 | 8.1E-39 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 9 | 118 | 2.5E-10 | IPR036537 |
| SMART | SM00185 | arm_5 | 382 | 422 | 3.1E-8 | IPR000225 |
| SMART | SM00185 | arm_5 | 464 | 504 | 1.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 423 | 463 | 0.12 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 259 | 322 | 3.2E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 588 | 628 | 32.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 546 | 586 | 11.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 393 | 435 | 14.8224 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 255 | 329 | 43.70837 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 252 | - | - |
| Coils | Coil | Coil | 619 | 639 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_006350762.1 | PREDICTED: U-box domain-containing protein 13-like isoform X1 [Solanum tuberosum] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | M1CZI6 | RING-type E3 ubiquitin transferase OS=Solanum tuberosum OX=4113 GN=102593028 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology