Basic Information
Locus ID:
gene-LOC132605555
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 167097 | 170904 | + | gene-LOC132605555 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 47,042.06 Da | 55.28 | 52.94 | -1.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 277 | 358 | 6.7E-14 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 376 | 407 | 3.0E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 277 | 360 | 2.8E-21 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 141 | - | - |
| Coils | Coil | Coil | 308 | 336 | - | - |
| Coils | Coil | Coil | 269 | 303 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_049348330.1 | uncharacterized protein LOC125812905 isoform X3 [Solanum verrucosum] | 0 |
| TrEMBL | M1AB54 | PAPA-1 domain-containing protein OS=Solanum tuberosum OX=4113 GN=102602865 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology