Basic Information
Locus ID:
gene-LOC132605353
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 118855652 | 118859229 | + | gene-LOC132605353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 39,122.71 Da | 41.15 | 68.31 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 291 | 331 | 5.5703E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 290 | 336 | 6.9E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 291 | 336 | 8.25E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 276 | 341 | 3.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 292 | 330 | 5.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 292 | 331 | 11.058237 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_049400893.1 | probable E3 ubiquitin-protein ligase LOG2 [Solanum stenotomum] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0V0I9A2 | RING-type E3 ubiquitin transferase OS=Solanum chacoense OX=4108 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology