Basic Information
Locus ID:
gene-LOC132605333
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 117172595 | 117177640 | - | gene-LOC132605333 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 101,957.08 Da | 49.95 | 62.09 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 559 | 596 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 410 | 443 | 3.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 554 | 1.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 693 | 730 | 0.0055 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 406 | 733 | 4.03E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 395 | 761 | 6.8E-63 | IPR015943 |
| SMART | SM00320 | WD40_4 | 599 | 637 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 557 | 596 | 2.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 444 | 5.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 644 | 688 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 864 | 905 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 689 | 730 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 554 | 2.6E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 523 | 563 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 563 | 598 | 10.548323 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 523 | 557 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 412 | 453 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 563 | 605 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 412 | 446 | 11.840134 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 707 | 730 | 9.572741 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 541 | 555 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 431 | 445 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 541 | 555 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 431 | 445 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 583 | 597 | 1.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 876 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 777 | 876 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 255 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_015056385.1 | WD repeat-containing protein 44-like [Solanum pennellii] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | M1BNR3 | WD-40 repeat family protein OS=Solanum tuberosum OX=4113 GN=102602947 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology