Basic Information
Locus ID:
gene-LOC132604622
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
DNA (cytosine-5)-methyltransferase CMT3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 134417201 | 134425973 | + | gene-LOC132604622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 106,335.90 Da | 44.73 | 76.74 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 499 | 554 | 2.81122E-29 | - |
| CDD | cd04716 | BAH_plantDCM_I | 237 | 356 | 3.03125E-58 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 565 | 914 | 1.6E-33 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 501 | 554 | 8.6E-11 | IPR023780 |
| Pfam | PF01426 | BAH domain | 240 | 346 | 8.5E-9 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 387 | 915 | 1.36E-77 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 495 | 556 | 9.16E-13 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 372 | 470 | 9.4E-13 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 177 | 342 | 1.8E-50 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 718 | 881 | 1.6E-224 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 495 | 932 | 1.6E-224 | - |
| SMART | SM00298 | chromo_7 | 499 | 558 | 1.4E-9 | IPR000953 |
| SMART | SM00439 | BAH_4 | 238 | 357 | 3.7E-12 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 238 | 357 | 16.814228 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 500 | 553 | 13.480601 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 386 | 922 | 46.313423 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 523 | 543 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 570 | 582 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 613 | 627 | 4.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 659 | 672 | 4.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 387 | 403 | 4.1E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 88 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_049402803.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Solanum stenotomum] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | M0ZYT7 | Chromomethylase OS=Solanum tuberosum OX=4113 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology