Basic Information
Locus ID:
gene-LOC132604495
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
PAS fold
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 132102788 | 132111392 | - | gene-LOC132604495 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 80,007.77 Da | 38.02 | 73.81 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 440 | 686 | 5.51501E-129 | - |
| CDD | cd00130 | PAS | 84 | 187 | 1.18655E-12 | IPR000014 |
| Pfam | PF00989 | PAS fold | 76 | 187 | 7.6E-12 | IPR013767 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 434 | 686 | 4.4E-68 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 415 | 686 | 1.89E-84 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 73 | 187 | 1.92E-19 | IPR035965 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 427 | 511 | 7.4E-31 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 72 | 192 | 1.5E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 512 | 712 | 2.6E-63 | - |
| SMART | SM00220 | serkin_6 | 434 | 694 | 3.0E-59 | IPR000719 |
| SMART | SM00091 | pas_2 | 75 | 140 | 3.8E-7 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 75 | 192 | 5.9E-15 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 434 | 694 | 43.509411 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 73 | 121 | 13.193722 | IPR000014 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 553 | 565 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 657 | 679 | 9.5E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 508 | 521 | 9.5E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 613 | 635 | 9.5E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 547 | 565 | 9.5E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 594 | 604 | 9.5E-12 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 65 | - | - |
| Coils | Coil | Coil | 15 | 35 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06620.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_049363809.1 | uncharacterized protein LOC125828549 isoform X1 [Solanum verrucosum] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G2VJM4 | Serine/threonine-protein kinase CTR1 OS=Capsicum baccatum OX=33114 GN=CQW23_29507 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology