Basic Information
Locus ID:
gene-LOC132604492
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
PAS fold
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 132056333 | 132064166 | - | gene-LOC132604492 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 90,146.59 Da | 44.02 | 78.90 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 126 | 228 | 2.22413E-13 | IPR000014 |
| CDD | cd13999 | STKc_MAP3K-like | 500 | 732 | 7.82781E-123 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 495 | 742 | 9.6E-63 | IPR001245 |
| Pfam | PF00989 | PAS fold | 118 | 224 | 7.8E-12 | IPR013767 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 476 | 733 | 1.75E-79 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 116 | 224 | 1.22E-20 | IPR035965 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 487 | 571 | 1.9E-30 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 126 | 232 | 4.9E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 572 | 750 | 7.3E-55 | - |
| SMART | SM00091 | pas_2 | 117 | 184 | 1.4E-9 | IPR000014 |
| SMART | SM00220 | serkin_6 | 494 | 746 | 8.6E-51 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 118 | 229 | 2.9E-15 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 115 | 186 | 14.835447 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 494 | 746 | 39.735634 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 613 | 625 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 62 | - | - |
| Coils | Coil | Coil | 15 | 35 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49470.3 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_049363809.1 | uncharacterized protein LOC125828549 isoform X1 [Solanum verrucosum] | 0 |
| Q9FPR3 | Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana OX=3702 GN=EDR1 PE=1 SV=1 | 0 | |
| TrEMBL | M1A0G1 | Map3k delta-1 protein kinase OS=Solanum tuberosum OX=4113 GN=102585267 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology