Basic Information
Locus ID:
gene-LOC132604491
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
PAS fold
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 132022025 | 132030028 | - | gene-LOC132604491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 82,921.23 Da | 45.34 | 76.98 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 478 | 724 | 7.82935E-131 | - |
| CDD | cd00130 | PAS | 124 | 226 | 1.09734E-15 | IPR000014 |
| Pfam | PF00989 | PAS fold | 116 | 225 | 1.6E-16 | IPR013767 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 472 | 724 | 5.1E-70 | IPR001245 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 119 | 222 | 1.92E-22 | IPR035965 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 458 | 723 | 2.02E-85 | IPR011009 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 124 | 229 | 3.2E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 550 | 745 | 1.7E-64 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 465 | 549 | 1.7E-31 | - |
| SMART | SM00220 | serkin_6 | 472 | 728 | 1.1E-60 | IPR000719 |
| SMART | SM00091 | pas_2 | 115 | 182 | 6.5E-11 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 115 | 226 | 1.3E-18 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 113 | 184 | 19.08462 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 472 | 728 | 44.074772 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 591 | 603 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 695 | 717 | 2.2E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 651 | 673 | 2.2E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 585 | 603 | 2.2E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 546 | 559 | 2.2E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 632 | 642 | 2.2E-12 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 97 | - | - |
| Coils | Coil | Coil | 15 | 35 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49470.3 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_049363809.1 | uncharacterized protein LOC125828549 isoform X1 [Solanum verrucosum] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | M1A0G1 | Map3k delta-1 protein kinase OS=Solanum tuberosum OX=4113 GN=102585267 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology