Basic Information
Locus ID:
gene-LOC132604414
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 130187260 | 130192549 | - | gene-LOC132604414 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 99,419.64 Da | 43.15 | 84.67 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 583 | 856 | 6.2029E-91 | - |
| Pfam | PF13855 | Leucine rich repeat | 379 | 420 | 4.6E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 580 | 794 | 2.4E-47 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 551 | 853 | 1.62E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 35 | 430 | 1.28E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 541 | 654 | 8.7E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 320 | 444 | 1.5E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 316 | 3.9E-65 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 655 | 878 | 2.0E-56 | - |
| SMART | SM00220 | serkin_6 | 577 | 857 | 1.2E-42 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 383 | 406 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 84 | 106 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 407 | 429 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 276 | 298 | 400.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 107 | 130 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 181 | 204 | 15.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 577 | 857 | 41.078365 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 702 | 714 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 583 | 605 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 475 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006349904.1 | PREDICTED: receptor-like kinase TMK4 [Solanum tuberosum] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | M1A0C5 | Rhg4-like receptor kinase II OS=Solanum tuberosum OX=4113 GN=102578437 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology