Basic Information
Locus ID:
gene-LOC132604413
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 130165884 | 130170186 | - | gene-LOC132604413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 100,865.88 Da | 43.65 | 84.71 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 586 | 859 | 3.1678E-94 | - |
| Pfam | PF13855 | Leucine rich repeat | 380 | 421 | 4.7E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 583 | 851 | 3.1E-47 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 36 | 431 | 8.67E-48 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 554 | 856 | 9.17E-80 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 317 | 4.1E-66 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 658 | 877 | 1.2E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 321 | 445 | 1.6E-27 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 543 | 657 | 7.8E-37 | - |
| SMART | SM00369 | LRR_typ_2 | 85 | 107 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 408 | 430 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 108 | 131 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 277 | 299 | 400.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 580 | 860 | 6.5E-42 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 384 | 407 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 182 | 205 | 15.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 580 | 860 | 41.219704 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 705 | 717 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 586 | 608 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 905 | 927 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006349904.1 | PREDICTED: receptor-like kinase TMK4 [Solanum tuberosum] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | M1A0C5 | Rhg4-like receptor kinase II OS=Solanum tuberosum OX=4113 GN=102578437 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology