Basic Information
Locus ID:
gene-LOC132604281
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 126845659 | 126860339 | - | gene-LOC132604281 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 78,517.74 Da | 51.21 | 74.37 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 111 | 416 | 9.8358E-153 | - |
| Pfam | PF01753 | MYND finger | 10 | 47 | 3.5E-11 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 112 | 415 | 2.8E-39 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 108 | 426 | 1.06E-83 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 8 | 51 | 4.19E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 2 | 49 | 5.8E-14 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 109 | 424 | 1.4E-85 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 10 | 47 | 12.302678 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 112 | 418 | 47.07 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 113 | 128 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 10 | 47 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 591 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 590 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31670.1 | ubiquitin-specific protease 18. | 0 |
| RefSeq | XP_049415702.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Solanum stenotomum] | 0 |
| Q67XW5 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana OX=3702 GN=UBP18 PE=2 SV=2 | 0 | |
| TrEMBL | A0A314KR80 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Nicotiana attenuata OX=49451 GN=UBP19 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology