Basic Information
Locus ID:
gene-LOC132604232
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 126221580 | 126227677 | - | gene-LOC132604232 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 48,308.92 Da | 47.27 | 93.29 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 56 | 254 | 2.66853E-136 | - |
| CDD | cd18787 | SF2_C_DEAD | 265 | 395 | 7.99737E-61 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 77 | 238 | 2.5E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 278 | 386 | 1.2E-28 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 121 | 406 | 1.41E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 42 | 260 | 1.4E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 261 | 425 | 1.1E-57 | IPR027417 |
| SMART | SM00490 | helicmild6 | 305 | 386 | 4.1E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 71 | 268 | 5.6E-58 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 264 | 425 | 25.666222 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 52 | 80 | 10.433057 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 83 | 253 | 29.729666 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 199 | 207 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_006342504.1 | PREDICTED: eukaryotic initiation factor 4A-2 [Solanum tuberosum] | 0 |
| P41379 | Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | M1CUZ9 | Eukaryotic initiation factor 4A-2 OS=Solanum tuberosum OX=4113 GN=102595069 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology