Basic Information
Locus ID:
gene-LOC132603853
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 113477529 | 113480813 | + | gene-LOC132603853 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 39,138.79 Da | 58.16 | 89.08 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 294 | 336 | 2.93487E-19 | - |
| Pfam | PF13639 | Ring finger domain | 294 | 336 | 6.9E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 287 | 340 | 2.26E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 279 | 342 | 8.2E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 295 | 335 | 1.4E-9 | IPR001841 |
| SMART | SM00744 | ringv_2 | 294 | 336 | 0.0017 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 295 | 336 | 13.418717 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12760.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_016551467.2 | E3 ubiquitin-protein ligase At1g63170 [Capsicum annuum] | 0 |
| Q9LN71 | E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8EW84 | E3 ubiquitin-protein ligase At1g63170-like OS=Capsicum annuum OX=4072 GN=LOC107851078 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology