Basic Information
Locus ID:
gene-LOC132603768
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Protein present in Fab1, YOTB, Vac1, and EEA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 110051824 | 110064156 | + | gene-LOC132603768 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 196,959.41 Da | 51.67 | 75.20 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15725 | FYVE_PIKfyve_Fab1 | 34 | 101 | 6.78148E-30 | - |
| CDD | cd03334 | Fab1_TCP | 373 | 645 | 1.02654E-122 | - |
| CDD | cd17300 | PIPKc_PIKfyve | 1481 | 1744 | 1.27737E-151 | IPR044769 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1520 | 1686 | 6.2E-34 | IPR002498 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 394 | 632 | 3.3E-33 | IPR002423 |
| Pfam | PF01363 | FYVE zinc finger | 35 | 103 | 3.2E-18 | IPR000306 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1477 | 1744 | 2.4E-81 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 33 | 107 | 6.72E-21 | IPR011011 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 439 | 611 | 3.14E-43 | IPR027409 |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1446 | 1601 | 1.1E-37 | IPR027484 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 438 | 611 | 8.0E-55 | IPR027409 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 111 | 3.4E-22 | IPR013083 |
| Gene3D | G3DSA:3.30.810.10 | - | 1605 | 1745 | 1.1E-41 | - |
| SMART | SM00064 | fyve_4 | 30 | 105 | 1.3E-22 | IPR000306 |
| SMART | SM00330 | PIPK_2 | 1458 | 1745 | 1.5E-126 | IPR002498 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1420 | 1744 | 58.359814 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 38 | 104 | 13.050462 | IPR017455 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1273 | 1287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1163 | 1182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1208 | 1231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1163 | 1181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1202 | 1231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1253 | 1302 | - | - |
| Coils | Coil | Coil | 1058 | 1078 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_015158319.1 | PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like isoform X1 [Solanum tuberosum] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BD12 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Solanum chilense OX=4083 GN=EJD97_016273 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology