Basic Information
Locus ID:
gene-LOC132603747
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 163151166 | 163171697 | + | gene-LOC132603747 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 130,325.64 Da | 44.35 | 78.83 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 53 | 176 | 1.02466E-40 | IPR002083 |
| CDD | cd17039 | Ubl_ubiquitin_like | 1015 | 1070 | 0.00950661 | - |
| CDD | cd02659 | peptidase_C19C | 194 | 522 | 1.15444E-164 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 883 | 1091 | 1.7E-55 | IPR029346 |
| Pfam | PF00917 | MATH domain | 58 | 178 | 9.2E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 196 | 517 | 4.9E-46 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 621 | 873 | 9.3E-77 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 191 | 547 | 3.34E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 49 | 182 | 7.85E-42 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 49 | 192 | 4.6E-53 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 681 | 798 | 7.6E-44 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 799 | 896 | 1.4E-25 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 193 | 521 | 1.5E-88 | - |
| SMART | SM00061 | math_3 | 53 | 157 | 3.2E-22 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 196 | 520 | 40.246323 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 51 | 176 | 37.931618 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 436 | 453 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 197 | 212 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| Coils | Coil | Coil | 533 | 560 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_016547209.1 | ubiquitin C-terminal hydrolase 13 isoform X1 [Capsicum annuum] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8ETJ2 | ubiquitinyl hydrolase 1 OS=Capsicum annuum OX=4072 GN=LOC107847458 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology