Basic Information
Locus ID:
gene-LOC132603413
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 41897694 | 41911723 | + | gene-LOC132603413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 145,436.88 Da | 45.72 | 98.24 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 369 | 411 | 3.20186E-18 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 1046 | 1081 | 0.01 | IPR001680 |
| Pfam | PF04564 | U-box domain | 366 | 437 | 4.0E-14 | IPR003613 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1022 | 1291 | 5.34E-31 | IPR036322 |
| SUPERFAMILY | SSF48371 | ARM repeat | 615 | 976 | 2.98E-10 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 360 | 437 | 6.62E-21 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 632 | 984 | 4.8E-6 | IPR011989 |
| Gene3D | G3DSA:2.130.10.10 | - | 1013 | 1123 | 2.7E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1124 | 1291 | 2.0E-13 | IPR015943 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 350 | 449 | 1.5E-23 | IPR013083 |
| SMART | SM00320 | WD40_4 | 990 | 1037 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1168 | 1208 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1251 | 1290 | 0.86 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1042 | 1081 | 4.4E-5 | IPR001680 |
| SMART | SM00504 | Ubox_2 | 368 | 432 | 1.8E-22 | IPR003613 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1258 | 1292 | 9.472486 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1258 | 1292 | 9.335602 | - |
| ProSiteProfiles | PS51698 | U-box domain profile. | 364 | 439 | 31.032482 | IPR003613 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1049 | 1083 | 9.810144 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1049 | 1083 | 11.744925 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 297 | - | - |
| Coils | Coil | Coil | 160 | 180 | - | - |
| Coils | Coil | Coil | 315 | 335 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06880.2 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_009606221.1 | putative E3 ubiquitin-protein ligase LIN isoform X1 [Nicotiana tomentosiformis] | 0 |
| C6L7U1 | Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus OX=34305 GN=CERBERUS PE=2 SV=2 | 0 | |
| TrEMBL | A0A1S4AEY5 | RING-type E3 ubiquitin transferase OS=Nicotiana tabacum OX=4097 GN=LOC107796870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg11768, jg11769, jg11770, jg11771, jg31633, jg31634 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30049320, pistato.v30256780 |
| Apiaceae | Apium graveolens | 3 | Ag2G02459, Ag3G02527, Ag8G00225 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G011900, COCNU_07G002000 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702597, gene-LOC103706139 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1751.V1.1, AsparagusV1_03.2268.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri4G07535, Ftri7G18227, Ftri8G01620 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0877, Ceq06G1516 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0956, Cgl06G1574 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-141, nbisL1-mrna-8648 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.710, evm.TU.LG07.1111 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003863, Pov_00020671 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.91, BH01.509, BH02.80, CH02.102 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0000840, gene-QOZ80_1BG0049330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0248980.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_051444, gene-QYE76_051560, gene-QYE76_051566 |
| Poaceae | Oryza coarctata | 2 | Oco01G005770, Oco02G005870 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g12930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G006500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204871 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr21G016220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G274000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG020830, gene_TRIDC3BG031130 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G154900.1, TraesCS3B02G181200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb119290_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-24273, nbis-gene-24274, nbis-gene-32721 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7183, Zma_g9505 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.437, evm.TU.Scaffold_4_RagTag.1931 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13099, nbisL1-mrna-16388, nbisL1-mrna-25645 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12295, nbisL1-mrna-6585 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-13044, nbisL1-mrna-13045, nbisL1-mrna-16830 ... |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000018l.158, add.evm.TU.utg000033l.95 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000143, Maker00011993, Maker00014879 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20232, nbisL1-mrna-23194 |
| Salicaceae | Populus euphratica | 5 | populus_peu15357, populus_peu21947, populus_peu33000 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603413, gene-LOC132622109 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107017250, gene-LOC107025502, gene-LOC114077896 |