Basic Information
Locus ID:
gene-LOC132603347
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Protein present in Fab1, YOTB, Vac1, and EEA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 28479197 | 28494421 | + | gene-LOC132603347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 198,826.56 Da | 45.91 | 73.03 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17300 | PIPKc_PIKfyve | 1496 | 1759 | 1.08345E-148 | IPR044769 |
| CDD | cd03334 | Fab1_TCP | 371 | 643 | 8.19918E-134 | - |
| CDD | cd15725 | FYVE_PIKfyve_Fab1 | 30 | 97 | 6.56335E-30 | - |
| Pfam | PF01363 | FYVE zinc finger | 31 | 100 | 5.1E-18 | IPR000306 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1535 | 1701 | 8.2E-34 | IPR002498 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 392 | 633 | 1.3E-34 | IPR002423 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 29 | 105 | 2.54E-20 | IPR011011 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1494 | 1759 | 2.09E-79 | - |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 437 | 609 | 4.19E-43 | IPR027409 |
| SUPERFAMILY | SSF54849 | GroEL-intermediate domain like | 392 | 629 | 7.94E-5 | IPR027410 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 436 | 609 | 3.6E-54 | IPR027409 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 104 | 7.2E-22 | IPR013083 |
| Gene3D | G3DSA:3.30.810.10 | - | 1618 | 1760 | 5.0E-42 | - |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1453 | 1616 | 1.4E-36 | IPR027484 |
| SMART | SM00330 | PIPK_2 | 1469 | 1760 | 4.8E-125 | IPR002498 |
| SMART | SM00064 | fyve_4 | 26 | 101 | 6.1E-21 | IPR000306 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1435 | 1759 | 58.138325 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 34 | 100 | 13.166643 | IPR017455 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 253 | - | - |
| Coils | Coil | Coil | 1072 | 1099 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_049415056.1 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like [Solanum stenotomum] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A0V0J054 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Solanum chacoense OX=4108 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology