Basic Information
Locus ID:
gene-LOC132603247
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
ari8,atari8
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 162339148 | 162354131 | + | gene-LOC132603247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 63,239.71 Da | 51.95 | 56.85 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 141 | 191 | 1.82637E-17 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 289 | 337 | 5.6E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 210 | 272 | 7.9E-16 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 137 | 222 | 6.56E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 291 | 339 | 2.19E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 210 | 279 | 1.77E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 220 | 6.9E-19 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 268 | 523 | 1.6E-85 | - |
| SMART | SM00647 | ibrneu5 | 285 | 346 | 0.054 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 210 | 272 | 3.5E-24 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 187 | 9.479666 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 137 | 350 | 53.138489 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| Coils | Coil | Coil | 358 | 378 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_006347287.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Solanum tuberosum] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | M1CKI5 | RBR-type E3 ubiquitin transferase OS=Solanum tuberosum OX=4113 GN=102595867 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology