Basic Information
Locus ID:
gene-LOC132603150
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 12609231 | 12618617 | + | gene-LOC132603150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 124,613.60 Da | 39.13 | 76.89 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 920 | 953 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 463 | 497 | 4.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 839 | 1098 | 6.23E-33 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 357 | 675 | 6.96E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 787 | 1097 | 3.0E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 555 | 707 | 2.7E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 328 | 553 | 1.1E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 827 | 869 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 915 | 954 | 9.0E-6 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 2.0E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 872 | 912 | 2.8 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.0E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 410 | 450 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 389 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 456 | 497 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1006 | 1047 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 500 | 541 | 0.054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 590 | 630 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 546 | 587 | 21.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 922 | 953 | 10.126507 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.901196 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 463 | 506 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.564428 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 922 | 953 | 12.145943 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1107 | 1132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1115 | 1132 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_009803406.1 | PREDICTED: topless-related protein 4-like isoform X1 [Nicotiana sylvestris] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1U7YN42 | topless-related protein 4-like isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104248778 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology