Basic Information
Locus ID:
gene-LOC132603116
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
NTMC2T2.1
Description:
Calcium lipid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 11256371 | 11278507 | - | gene-LOC132603116 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 63,628.14 Da | 29.17 | 101.17 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 366 | 1.0144E-25 | - |
| CDD | cd00030 | C2 | 442 | 538 | 2.27318E-27 | - |
| Pfam | PF00168 | C2 domain | 262 | 366 | 1.2E-22 | IPR000008 |
| Pfam | PF00168 | C2 domain | 440 | 542 | 1.3E-24 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 2.3E-13 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 438 | 559 | 6.55E-33 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 392 | 3.99E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 428 | 558 | 8.3E-35 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 255 | 390 | 1.5E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 363 | 2.9E-22 | IPR000008 |
| SMART | SM00239 | C2_3c | 441 | 539 | 8.0E-25 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 422 | 540 | 21.152363 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 20.55582 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 29.973618 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 457 | 469 | 2.0E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 483 | 496 | 2.0E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 505 | 513 | 2.0E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_019267270.1 | PREDICTED: synaptotagmin-5-like [Nicotiana attenuata] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A314L0C4 | Synaptotagmin-5 OS=Nicotiana attenuata OX=49451 GN=SYT5_2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology