Basic Information
Locus ID:
gene-LOC132603098
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 10112044 | 10114552 | + | gene-LOC132603098 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 51,073.46 Da | 67.39 | 73.87 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 135 | 178 | 1.14566E-18 | - |
| Pfam | PF13639 | Ring finger domain | 135 | 178 | 3.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 115 | 183 | 5.05E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 184 | 1.3E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 136 | 177 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 178 | 12.740079 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 428 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016516037.1 | PREDICTED: LOW QUALITY PROTEIN: RING-H2 finger protein ATL43-like [Nicotiana tabacum] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1S4DRJ8 | LOW QUALITY PROTEIN: RING-H2 finger protein ATL43-like OS=Nicotiana tabacum OX=4097 GN=LOC107832686 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology