Basic Information
Locus ID:
gene-LOC132603044
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7160474 | 7162752 | + | gene-LOC132603044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 42,217.53 Da | 43.40 | 78.70 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 28 | 367 | 5.47427E-148 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 34 | 361 | 7.8E-78 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 34 | 361 | 4.52E-72 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 267 | 332 | 5.04E-12 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 49 | 361 | 3.3E-107 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 266 | 332 | 3.3E-107 | IPR029070 |
| SMART | SM00636 | 2g34 | 30 | 361 | 6.0E-103 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 30 | 377 | 71.700233 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 137 | 145 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19750.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_016579835.2 | nod factor hydrolase protein 1 [Capsicum annuum] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G2WXT5 | GH18 domain-containing protein OS=Capsicum baccatum OX=33114 GN=CQW23_09758 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology