Basic Information
Locus ID:
gene-LOC132603041
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7050715 | 7053187 | + | gene-LOC132603041 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 42,350.32 Da | 45.27 | 75.57 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 28 | 367 | 1.74417E-147 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 34 | 361 | 6.7E-78 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 34 | 361 | 1.89E-73 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 267 | 332 | 5.04E-13 | IPR029070 |
| Gene3D | G3DSA:3.10.50.10 | - | 266 | 332 | 3.3E-109 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 49 | 361 | 3.3E-109 | - |
| SMART | SM00636 | 2g34 | 30 | 361 | 8.0E-104 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 30 | 377 | 72.94574 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 137 | 145 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19820.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_016579834.2 | nod factor hydrolase protein 1 [Capsicum annuum] | 0 |
| A0A072VEP0 | Class V chitinase CHIT5a OS=Medicago truncatula OX=3880 GN=CHIT5A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G3BXJ6 | GH18 domain-containing protein OS=Capsicum chinense OX=80379 GN=BC332_18150 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology