Basic Information
Locus ID:
gene-LOC132603028
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6641689 | 6644448 | - | gene-LOC132603028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 41,753.40 Da | 33.80 | 81.37 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 26 | 362 | 1.54333E-144 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 32 | 357 | 3.0E-83 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 32 | 361 | 1.19E-67 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 260 | 328 | 2.68E-13 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 44 | 357 | 5.1E-126 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 259 | 328 | 5.1E-126 | IPR029070 |
| SMART | SM00636 | 2g34 | 28 | 357 | 5.4E-107 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 28 | 373 | 71.02832 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_009624962.1 | class V chitinase-like [Nicotiana tomentosiformis] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4BUP5 | chitotriosidase-1-like OS=Nicotiana tabacum OX=4097 GN=LOC107812074 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology