Basic Information
Locus ID:
gene-LOC132603027
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Receptor-like kinase CHRK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6595506 | 6603563 | + | gene-LOC132603027 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 89,878.13 Da | 42.26 | 83.99 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 465 | 756 | 4.09246E-86 | - |
| CDD | cd02879 | GH18_plant_chitinase_class_V | 31 | 369 | 4.11637E-137 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 460 | 673 | 2.0E-43 | IPR001245 |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 36 | 363 | 5.1E-78 | IPR001223 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 441 | 773 | 4.05E-75 | IPR011009 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 33 | 363 | 1.26E-65 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 266 | 334 | 1.2E-12 | IPR029070 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 433 | 534 | 6.1E-35 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 49 | 363 | 2.0E-120 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 535 | 768 | 1.2E-53 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 265 | 334 | 2.0E-120 | IPR029070 |
| SMART | SM00636 | 2g34 | 33 | 363 | 3.8E-108 | IPR011583 |
| SMART | SM00220 | serkin_6 | 459 | 762 | 3.5E-32 | IPR000719 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 33 | 379 | 68.0047 | IPR001223 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 459 | 769 | 36.640289 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 580 | 592 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 785 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_006343680.2 | PREDICTED: receptor-like serine/threonine-protein kinase SD1-6 [Solanum tuberosum] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7XXG6 | chitinase-3-like protein 2 OS=Nicotiana sylvestris OX=4096 GN=LOC104241083 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33011 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014646 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25416, Sbi_jg9258 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19333, Seu_jg19334 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011117 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41832, Sgl46632 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032170 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.8AG0019370, CQ.Regalona.r1.8BG0023030 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179160 |
| Asteraceae | Flaveria trinervia | 2 | Ftri7G06819, Ftri7G12214 |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq03G2520, Ceq03G2521, Ceq03G2524, Ceq03G2703 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl03G2660, Cgl03G2661, Cgl03G2662, Cgl06G0541 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.224 |
| Plumbaginaceae | Limonium bicolor | 13 | Lb0G37026, Lb0G37435, Lb1G01286, Lb1G01287, Lb1G01293 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG18.644 |
| Rhizophoraceae | Bruguiera sexangula | 9 | evm.TU.51077.1, evm.TU.51077.3, evm.TU.51077.4 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-25268, nbisL1-mrna-25269, nbisL1-mrna-25271 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13176 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-4958, nbisL1-mrna-4959, nbisL1-mrna-4960 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1294, evm.TU.utg000008l.1295 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000167, Maker00001187, Maker00001564 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1887, nbisL1-mrna-1888 |
| Rhizophoraceae | Rhizophora mangle | 6 | nbisL1-mrna-22244, nbisL1-mrna-22245, nbisL1-mrna-22246 ... |
| Salicaceae | Populus euphratica | 2 | populus_peu05630, populus_peu05631 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132602011, gene-LOC132602094, gene-LOC132603025 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI001943000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024563 |