Basic Information
Locus ID:
gene-LOC132602578
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 124582253 | 124585646 | - | gene-LOC132602578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 32,976.23 Da | 48.09 | 61.74 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 28 | 113 | 2.27298E-40 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 211 | 275 | 9.75351E-19 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 211 | 278 | 3.7E-13 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 31 | 113 | 9.9E-20 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 200 | 282 | 1.96E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 21 | 123 | 5.76E-31 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 195 | 286 | 3.7E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 18 | 124 | 8.9E-27 | IPR036431 |
| SMART | SM00501 | bright_3 | 27 | 118 | 1.3E-30 | IPR001606 |
| SMART | SM01014 | ARID_2 | 23 | 113 | 6.8E-28 | - |
| SMART | SM00398 | hmgende2 | 210 | 279 | 1.0E-14 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 26 | 117 | 26.123476 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 211 | 278 | 14.58709 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 216 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_016455704.1 | PREDICTED: high mobility group B protein 9 [Nicotiana tabacum] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3YU05 | high mobility group B protein 9 OS=Nicotiana tabacum OX=4097 GN=LOC107779738 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology