Basic Information
Locus ID:
gene-LOC132602058
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 3517062 | 3520118 | + | gene-LOC132602058 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 45,397.54 Da | 38.24 | 87.98 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 350 | 391 | 1.56959E-18 | - |
| Pfam | PF13639 | Ring finger domain | 349 | 391 | 1.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 344 | 394 | 8.62E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 311 | 394 | 6.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 350 | 390 | 1.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 350 | 391 | 13.699024 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025887723.1 | uncharacterized protein LOC112941819 [Solanum lycopersicum] | 0 |
| Q9Y252 | E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens OX=9606 GN=RNF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G3BX69 | E3 ubiquitin-protein ligase OS=Capsicum chinense OX=80379 GN=BC332_18009 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for gene-LOC132602058.