Basic Information
Locus ID:
gene-LOC132601986
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 133071135 | 133072271 | - | gene-LOC132601986 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 43,393.60 Da | 42.20 | 91.98 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 28 | 62 | 1.8E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 93 | 8.24E-9 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 111 | 249 | 7.45E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 25 | 62 | 4.0E-5 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 143 | 339 | 3.2E-26 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49610.1 | F-box family protein. | 0 |
| RefSeq | XP_006349784.1 | PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum tuberosum] | 0 |
| Q9FGY4 | F-box protein At5g49610 OS=Arabidopsis thaliana OX=3702 GN=At5g49610 PE=1 SV=1 | 0 | |
| TrEMBL | M1A0L6 | F-box domain-containing protein OS=Solanum tuberosum OX=4113 GN=102595119 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 7 | gene-LOC132601986, gene-LOC132601987, gene-LOC132603133 ... |
| Solanaceae | Solanum chilense | 6 | SOLCI000005900, SOLCI001662300, SOLCI001819600 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107001609, gene-LOC107010212, gene-LOC107025894 ... |