halophFGD

Basic Information

Locus ID: gene-LOC132601922

Species & Taxonomic ID: Lycium barbarum & 112863

Genome Assembly: GCF_019175385.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	127385823	127387709	+	gene-LOC132601922

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.03	71,384.43 Da	60.62	66.07	-0.96

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14111	Domain of unknown function (DUF4283)	56	195	5.8E-31	IPR025558
MobiDBLite	mobidb-lite	consensus disorder prediction	521	537	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	258	352	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	258	281	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	30	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	316	343	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	484	628	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	395	418	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	554	570	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	282	306	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	601	628	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	484	503	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	571	588	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_016456510.1	PREDICTED: uncharacterized protein LOC107780474 [Nicotiana tabacum]	0
TrEMBL	M0ZWW6	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H OS=Solanum tuberosum OX=4113 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.681.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g04130
Solanaceae	Lycium barbarum	44	gene-LOC132599789, gene-LOC132601267, gene-LOC132601380 ... gene-LOC132601883, gene-LOC132601893, gene-LOC132601922, gene-LOC132606002, gene-LOC132607734, gene-LOC132609505, gene-LOC132610402, gene-LOC132611827, gene-LOC132612098, gene-LOC132612101, gene-LOC132612132, gene-LOC132612161, gene-LOC132612301, gene-LOC132612811, gene-LOC132612943, gene-LOC132613748, gene-LOC132615817, gene-LOC132617405, gene-LOC132619559, gene-LOC132619608, gene-LOC132620049, gene-LOC132623978, gene-LOC132624193, gene-LOC132624351, gene-LOC132624353, gene-LOC132624363, gene-LOC132628281, gene-LOC132628294, gene-LOC132628470, gene-LOC132629150, gene-LOC132631066, gene-LOC132631437, gene-LOC132631524, gene-LOC132631534, gene-LOC132637239, gene-LOC132637284, gene-LOC132639155, gene-LOC132639331, gene-LOC132639829, gene-LOC132643879, gene-LOC132644615
Solanaceae	Solanum chilense	37	SOLCI000177100, SOLCI000563900, SOLCI001032000 ... SOLCI001267600, SOLCI001302000, SOLCI001561300, SOLCI001623700, SOLCI001652900, SOLCI002142100, SOLCI002298300, SOLCI002435500, SOLCI002634400, SOLCI002750700, SOLCI003008500, SOLCI003121300, SOLCI003335900, SOLCI003420000, SOLCI003569900, SOLCI003899300, SOLCI003914900, SOLCI004089200, SOLCI004107200, SOLCI004164900, SOLCI004492500, SOLCI004715900, SOLCI004719400, SOLCI004929300, SOLCI004976100, SOLCI005111200, SOLCI005325900, SOLCI005500300, SOLCI006148400, SOLCI006625600, SOLCI006891100, SOLCI007303800, SOLCI007398600, SOLCI007411400
Solanaceae	Solanum pennellii	3	gene-LOC107022842, gene-LOC114076821, gene-LOC114077933