Basic Information
Locus ID:
gene-LOC132601443
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 159817152 | 159823452 | + | gene-LOC132601443 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 56,001.38 Da | 50.72 | 74.46 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 209 | 238 | 0.079 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 21 | 481 | 4.0E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 64 | 489 | 3.6E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 453 | 490 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 238 | 0.81 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 404 | 68.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 289 | 99.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 132 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 15 | 50 | 13.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 1 | 491 | 8.2E-164 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 460 | 489 | 8.3E-111 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 323 | 350 | 8.3E-111 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 238 | 265 | 8.3E-111 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 210 | 237 | 8.3E-111 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 108 | 136 | 8.3E-111 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 266 | 294 | 8.3E-111 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 295 | 322 | 8.3E-111 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 29 | 49 | 8.3E-111 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 351 | 376 | 8.3E-111 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 377 | 403 | 8.3E-111 | IPR000009 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.2 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_016578278.2 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 [Capsicum annuum] | 0 |
| Q39247 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G3C9Q7 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Capsicum chinense OX=80379 GN=BC332_16694 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology