Basic Information
Locus ID:
gene-LOC132601221
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7163015 | 7164779 | - | gene-LOC132601221 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 43,769.82 Da | 48.16 | 74.18 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 57 | 393 | 6.83626E-125 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 63 | 387 | 2.3E-67 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 60 | 396 | 3.99E-63 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 293 | 358 | 3.66E-11 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 77 | 388 | 3.0E-92 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 292 | 358 | 3.0E-92 | IPR029070 |
| SMART | SM00636 | 2g34 | 59 | 387 | 1.0E-80 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 59 | 403 | 58.942024 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 165 | 173 | - | IPR001579 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_049360032.1 | class V chitinase CHIT5-like [Solanum verrucosum] | 0 |
| A0A1B1J8Z2 | Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G2Z060 | GH18 domain-containing protein OS=Capsicum annuum OX=4072 GN=T459_18924 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology