Basic Information
Locus ID:
gene-LOC132601219
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7087560 | 7090189 | - | gene-LOC132601219 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 25,873.09 Da | 39.92 | 75.57 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 94 | 213 | 1.1E-18 | IPR001223 |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 1 | 65 | 1.1E-11 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 121 | 186 | 1.22E-9 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1 | 218 | 7.32E-29 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 120 | 186 | 8.0E-34 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 90 | 212 | 8.0E-34 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1 | 65 | 5.0E-14 | - |
| SMART | SM00636 | 2g34 | 1 | 215 | 3.5E-7 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 1 | 227 | 19.864361 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 39 | 47 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_049360032.1 | class V chitinase CHIT5-like [Solanum verrucosum] | 0 |
| A0A072UR65 | Class V chitinase CHIT5b OS=Medicago truncatula OX=3880 GN=CHIT5B PE=1 SV=1 | 0 | |
| TrEMBL | M1AUY3 | Chitinase OS=Solanum tuberosum OX=4113 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology