Basic Information
Locus ID:
gene-LOC132600638
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 6621692 | 6623191 | - | gene-LOC132600638 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 47,474.06 Da | 39.57 | 111.41 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 57 | 9.99327E-19 | - |
| Pfam | PF04564 | U-box domain | 6 | 80 | 4.9E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 74 | 401 | 1.73E-9 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 88 | 1.13E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 85 | 4.6E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 94 | 401 | 1.1E-9 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 79 | 2.7E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 86 | 30.599043 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_016546669.2 | E3 ubiquitin-protein ligase PUB23 [Capsicum annuum] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G2VPS7 | RING-type E3 ubiquitin transferase OS=Capsicum baccatum OX=33114 GN=CQW23_26784 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology