Basic Information
Locus ID:
gene-LOC132600546
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Pentacotripeptide-repeat region of PRORP
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 158409892 | 158412724 | + | gene-LOC132600546 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 74,221.64 Da | 27.30 | 98.76 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 251 | 300 | 3.3E-15 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 461 | 509 | 2.3E-14 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 544 | 589 | 4.7E-10 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 392 | 439 | 1.9E-16 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 119 | 143 | 0.12 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 212 | 244 | 9.2E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 321 | 370 | 1.9E-16 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 146 | 194 | 2.9E-11 | IPR002885 |
| SUPERFAMILY | SSF81901 | HCP-like | 326 | 523 | 9.59E-8 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 37 | 199 | 2.2E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 406 | 534 | 3.2E-37 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 303 | 405 | 2.4E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 200 | 302 | 1.9E-31 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 535 | 667 | 9.9E-17 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 219 | 252 | 5.6E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 150 | 182 | 3.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 254 | 288 | 1.8E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 464 | 498 | 1.3E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 500 | 526 | 0.0014 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 325 | 358 | 3.1E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 359 | 392 | 2.3E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 547 | 580 | 2.3E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 394 | 428 | 2.1E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 184 | 218 | 1.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 429 | 463 | 3.8E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 287 | 321 | 9.876189 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 182 | 216 | 11.443655 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 147 | 181 | 10.314641 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 462 | 496 | 12.441133 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 392 | 426 | 12.474017 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 322 | 356 | 12.397287 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 357 | 391 | 11.158661 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 217 | 251 | 11.684803 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 252 | 286 | 12.58363 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 545 | 579 | 10.884628 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 427 | 461 | 12.210946 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006354771.1 | PREDICTED: pentatricopeptide repeat-containing protein At5g61400-like [Solanum tuberosum] | 0 |
| TrEMBL | A0A6N2CDF9 | Pentatricopeptide repeat-containing protein OS=Solanum chilense OX=4083 GN=EJD97_019571 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25739 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114320 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg31086, Sbi_jg31087, Sbi_jg58186 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25800 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004663 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000006569, gene:ENSEOMG00000021586 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0021750 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30144380 |
| Apiaceae | Apium graveolens | 1 | Ag10G02920 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3138.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G25377 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G61400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005336m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB07g041170.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.639 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011897 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G01801, Lb2G14045, Lb2G14046 |
| Poaceae | Echinochloa crus-galli | 1 | CH02.2277 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0534900, gene-QOZ80_6BG0488090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0484770.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005089 |
| Poaceae | Oryza coarctata | 2 | Oco17G004930, Oco18G004970 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g25050.1, LOC_Os10g15160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G072400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702222, Pt_Chr0702237 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G010270, Chr14G013680, Chr21G012810 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G374300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG036520, gene_TRIDC5BG038530 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G229600.1.cds1, TraesCS5B02G228400.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb312410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30868 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30296 |
| Posidoniaceae | Posidonia oceanica | 8 | gene.Posoc01g24530, gene.Posoc02g11950, gene.Posoc02g15500 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-28766, nbisL1-mrna-28767, nbisL1-mrna-28772 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11264 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1755 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.139 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000224 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22610 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1570 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600546 |
| Solanaceae | Solanum chilense | 1 | SOLCI005511700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021578 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10187 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2365 |