Basic Information
Locus ID:
gene-LOC132600490
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 3326601 | 3334712 | + | gene-LOC132600490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 86,528.23 Da | 67.77 | 66.38 | -0.98 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 703 | 741 | 2.39659E-17 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 701 | 746 | 1.5E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 688 | 753 | 5.4E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 703 | 741 | 9.922256 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 591 | 620 | - | - |
| Coils | Coil | Coil | 629 | 649 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_016548108.1 | uncharacterized protein LOC107847988 [Capsicum annuum] | 0 |
| TrEMBL | A0A1U8ENZ5 | uncharacterized protein LOC107847988 OS=Capsicum annuum OX=4072 GN=LOC107847988 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology