Basic Information
Locus ID:
gene-LOC132600489
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 3285702 | 3301221 | - | gene-LOC132600489 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 122,124.60 Da | 39.52 | 75.37 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 746 | 786 | 1.03279E-20 | - |
| Pfam | PF00628 | PHD-finger | 747 | 788 | 4.0E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 515 | 570 | 2.0E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 680 | 730 | 9.1E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 826 | 888 | 7.31E-8 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 993 | 1092 | 1.89E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 728 | 788 | 8.84E-17 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 830 | 893 | 3.7E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 731 | 823 | 1.6E-18 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 935 | 1104 | 2.3E-6 | - |
| SMART | SM00249 | PHD_3 | 746 | 787 | 8.3E-12 | IPR001965 |
| SMART | SM00249 | PHD_3 | 834 | 891 | 4.8E-5 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 832 | 893 | 8.7335 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 744 | 789 | 10.5313 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 747 | 786 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 608 | 644 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 608 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 300 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_049379767.1 | uncharacterized protein LOC125844496 isoform X2 [Solanum stenotomum] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | M0ZI39 | PHD zinc finger protein OS=Solanum tuberosum OX=4113 GN=102580511 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology