Basic Information
Locus ID:
gene-LOC132600426
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 2026559 | 2032127 | - | gene-LOC132600426 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 57,912.08 Da | 59.86 | 83.84 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 273 | 321 | 8.65263E-16 | - |
| Pfam | PF12906 | RING-variant domain | 273 | 320 | 6.9E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 269 | 324 | 1.02E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 258 | 329 | 2.6E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 272 | 321 | 1.6E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 265 | 327 | 19.073133 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 264 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006340158.1 | PREDICTED: uncharacterized protein LOC102578157 [Solanum tuberosum] | 0 |
| TrEMBL | A0A6N2BDA1 | RING-CH-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_014706 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology