Basic Information
Locus ID:
gene-LOC132600362
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
leucine-rich repeat receptor-like protein kinase At1g68400 isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 661092 | 664813 | + | gene-LOC132600362 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 71,617.71 Da | 29.39 | 90.03 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 357 | 620 | 6.1E-27 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 116 | 176 | 3.4E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 66 | 2.3E-5 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 192 | 213 | 0.69 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 357 | 624 | 1.28E-49 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 45 | 232 | 2.04E-29 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 335 | 429 | 1.9E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 430 | 634 | 3.7E-43 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 192 | 230 | 3.9E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 188 | 1.0E-34 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 353 | 625 | 24.400244 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68400.1 | leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_049353743.1 | probable leucine-rich repeat receptor-like protein kinase At1g68400 [Solanum verrucosum] | 0 |
| Q9M9C5 | Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana OX=3702 GN=At1g68400 PE=1 SV=1 | 0 | |
| TrEMBL | M1BQN6 | Serine-threonine protein kinase, plant-type OS=Solanum tuberosum OX=4113 GN=102582916 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag7G01865 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G001680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712875 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.466.V1.1 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.885, evm.TU.LG07.911 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2938, BH02.3022, CH02.3505 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0030780, gene-QOZ80_1BG0080730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0284310.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_054866 |
| Poaceae | Oryza coarctata | 2 | Oco01G018590, Oco02G018910 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g51400.1, LOC_Os02g16790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G252900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602932 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G014760, Chr08G014820 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G421700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG037470, gene_TRIDC3BG041890 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G250300.1, TraesCS3B02G279800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb361320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12723 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8520 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.711 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8875 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8960 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.497 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014661 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3889 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8007 |
| Salicaceae | Populus euphratica | 2 | populus_peu05046, populus_peu12649 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600362 |
| Solanaceae | Solanum chilense | 1 | SOLCI000709700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003077 |