Basic Information
Locus ID:
gene-LOC132600285
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Hippocampus abundant
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 136394758 | 136400619 | + | gene-LOC132600285 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 48,355.42 Da | 43.25 | 108.23 | 0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 10 | 424 | 4.50586E-48 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 10 | 384 | 2.2E-25 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 9 | 420 | 2.35E-36 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 6 | 423 | 1.3E-40 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 6 | 430 | 12.121874 | IPR020846 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 308 | 329 | 4.5E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 56 | 72 | 4.5E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 333 | 353 | 4.5E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 368 | 391 | 4.5E-6 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_009588093.1 | hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana tomentosiformis] | 0 |
| A4IF94 | Hippocampus abundant transcript-like protein 1 OS=Bos taurus OX=9913 GN=MFSD14B PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S4DFA3 | hippocampus abundant transcript-like protein 1 isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107829200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology