Basic Information
Locus ID:
gene-LOC132599974
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 110689002 | 110692596 | + | gene-LOC132599974 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 41,642.83 Da | 42.39 | 77.55 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 322 | 365 | 1.40981E-14 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 23 | 92 | 4.3E-17 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 153 | 226 | 4.9E-7 | IPR032872 |
| Pfam | PF13639 | Ring finger domain | 322 | 365 | 4.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 322 | 368 | 1.79E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 285 | 370 | 4.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 323 | 364 | 3.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 323 | 365 | 12.267982 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016582192.2 | putative RING-H2 finger protein ATL21A [Capsicum annuum] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A2G2YY75 | RING-type domain-containing protein OS=Capsicum annuum OX=4072 GN=T459_21987 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology