Basic Information
Locus ID:
gene-LOC132599973
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 110683420 | 110686311 | + | gene-LOC132599973 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 41,120.25 Da | 41.52 | 80.97 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 156 | 226 | 4.3E-8 | IPR032872 |
| Pfam | PF13639 | Ring finger domain | 320 | 363 | 1.8E-11 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 23 | 90 | 1.1E-17 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 317 | 365 | 1.64E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 280 | 368 | 5.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 321 | 362 | 5.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 363 | 12.25323 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_049351455.1 | putative RING-H2 finger protein ATL21A [Solanum verrucosum] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A2G3BTB7 | RING-type domain-containing protein OS=Capsicum chinense OX=80379 GN=BC332_21591 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology