Basic Information
Locus ID:
gene-LOC132599916
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Leucine Rich Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 493928 | 496548 | - | gene-LOC132599916 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 66,703.03 Da | 41.67 | 101.28 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 140 | 197 | 7.9E-10 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 215 | 273 | 6.9E-11 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 317 | 583 | 5.1E-47 | IPR000719 |
| Pfam | PF13516 | Leucine Rich repeat | 114 | 128 | 1.1 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 67 | 2.5E-5 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 52 | 302 | 2.27E-51 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 298 | 587 | 1.07E-67 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 395 | 594 | 2.6E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 321 | 394 | 7.4E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 137 | 5.1E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 201 | 319 | 4.3E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 138 | 200 | 1.3E-18 | IPR032675 |
| SMART | SM00220 | serkin_6 | 315 | 587 | 1.1E-29 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 315 | 594 | 35.45303 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 321 | 344 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 437 | 449 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_016503008.1 | PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 isoform X1 [Nicotiana tabacum] | 0 |
| Q9FGL5 | Receptor protein-tyrosine kinase CEPR1 OS=Arabidopsis thaliana OX=3702 GN=CEPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4CP48 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107821115 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology