Basic Information
Locus ID:
gene-LOC132599826
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Right handed beta helix region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 96255645 | 96259112 | + | gene-LOC132599826 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 51,415.24 Da | 54.67 | 79.43 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 106 | 422 | 1.4E-84 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 72 | 462 | 1.65E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 62 | 450 | 6.2E-118 | IPR012334 |
| SMART | SM00710 | pbh1 | 285 | 306 | 2100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 345 | 366 | 2700.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 262 | 283 | 110.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 235 | 261 | 38.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 316 | 337 | 3.8 | IPR006626 |
| SMART | SM00710 | pbh1 | 212 | 234 | 7300.0 | IPR006626 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_016483942.1 | PREDICTED: polygalacturonase At1g48100-like [Nicotiana tabacum] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S4B4T5 | polygalacturonase At1g48100-like OS=Nicotiana tabacum OX=4097 GN=LOC107804545 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology