Basic Information
Locus ID:
gene-LOC132599678
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 35094070 | 35094742 | + | gene-LOC132599678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 24,764.10 Da | 45.57 | 72.93 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 24 | 68 | 8.27492E-28 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 25 | 66 | 5.8E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 21 | 78 | 2.21E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 85 | 3.2E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 26 | 66 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 26 | 67 | 12.84335 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 41 | 50 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 111 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006338276.1 | PREDICTED: E3 ubiquitin-protein ligase RNF185-like [Solanum tuberosum] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | M1AMT0 | RING-type E3 ubiquitin transferase OS=Solanum tuberosum OX=4113 GN=102582225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology