Basic Information
Locus ID:
gene-LOC132599488
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5758124 | 5760375 | - | gene-LOC132599488 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 38,379.68 Da | 32.82 | 87.02 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 172 | 1.81957E-68 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 198 | 353 | 3.07736E-78 | - |
| Pfam | PF00190 | Cupin | 10 | 155 | 5.5E-30 | IPR006045 |
| Pfam | PF00190 | Cupin | 199 | 336 | 1.2E-20 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 16 | 345 | 5.77E-50 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 4 | 194 | 3.9E-36 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 195 | 356 | 2.4E-50 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 3 | 157 | 2.7E-31 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 195 | 339 | 1.2E-13 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 211 | 231 | 6.4E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 316 | 333 | 6.4E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 258 | 274 | 6.4E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 276 | 291 | 6.4E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 294 | 312 | 6.4E-14 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_019263019.1 | PREDICTED: glutelin type-B 2-like [Nicotiana attenuata] | 0 |
| Q8GZP6 | 11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1 | 0 | |
| TrEMBL | A0A314L6J3 | Glutelin type-a 1 OS=Nicotiana attenuata OX=49451 GN=GLUA1_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology